PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G109100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family LBD
Protein Properties Length: 230aa    MW: 24551.7 Da    PI: 4.9734
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G109100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.88.9e-39181191101
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrrkC +dC++ap+f +eq ++ fa+vhk+FGasnv kll+ lp+++r da+ ++++eA+ar++dPvyG+vg i++lqqq+++l+
  Aqcoe1G109100.1.p  18 PCGACKFLRRKCLADCIFAPHFVSEQgAAVFAVVHKVFGASNVAKLLQPLPDHKRLDAVLTICFEAQARLKDPVYGCVGNIFALQQQVMNLQ 109
                        7***********************998899************************************************************** PP

             DUF260  92 aelallkeel 101
                        ael++l++++
  Aqcoe1G109100.1.p 110 AELQYLQSQI 119
                        *****99985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.28217119IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-3818116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSASSSSSGG GGGSSGGPCG ACKFLRRKCL ADCIFAPHFV SEQGAAVFAV VHKVFGASNV  60
AKLLQPLPDH KRLDAVLTIC FEAQARLKDP VYGCVGNIFA LQQQVMNLQA ELQYLQSQIA  120
TMEIPMPPPP SPPPMPNAPP PSLSMSDLSS TSTMPTNLEL GITFDPQMQP TWTLEQREVD  180
FQQYGGGRNT TNNNAFNDVD DLEAMEHEIQ QRRGETIGAS TSSPPRPTS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510942.11e-73PREDICTED: LOB domain-containing protein 30-like
SwissprotO813232e-58LBD30_ARATH; LOB domain-containing protein 30
TrEMBLB9GPH43e-72B9GPH4_POPTR; Uncharacterized protein
TrEMBLA0A067KAC73e-72A0A067KAC7_JATCU; Uncharacterized protein
STRINGVIT_15s0048g00830.t013e-68(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.13e-53LBD family protein